Research workbench
Solution structure of 50S ribosomal protein L28 from thermotoga maritima. northeast structural genomics consortium target VR97
Analyse Solution structure of 50S ribosomal protein L28 from thermotoga maritima.… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2JZ6
- Type
- protein
- Length
- 77 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 50S ribosomal protein L28
- UniProt
- Q9WY96
- Pockets
- 1 · best druggability 0.56
Structure
solution nmr · 1 distinct chain · 8% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 50S ribosomal protein L28 | protein | 77 | 8% helix, 22% strand | Q9WY96 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 283 | 0.56 | 0.77 | 34 | empty |
Compared structures
- 2JZ6 · Solution structure of 50S ribosomal protein L28 from Thermotoga maritima. Northeast… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9WY96 · AlphaFold monomer V2.0 prediction for 50S ribosomal protein L28 (Q9WY96) · a predicted model of the same protein · chain A against A, TM-score 0.48
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9WY96
- Elsewhere: RCSB PDB 2JZ6 · PDBe 2JZ6 · UniProt Q9WY96
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