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A novel solution NMR structure of protein YST0336 from saccharomyces cerevisiae. northeast structural genomics consortium target YT51/ONTARIO centre for structural proteomics target YST0336

Analyse A novel solution NMR structure of protein YST0336 from saccharomyces… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2JYN
Type: protein
Length: 146 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: UPF0368 protein YPL225W
UniProt: Q08971
Pockets: 4 · best druggability 0.51

Structure

solution nmr · 1 distinct chain · 49% helix, 7% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	UPF0368 protein YPL225W	protein	146	49% helix, 7% strand	Q08971

Pockets

4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	53	0.51	0.87	12	empty
2	55	0.43	0.83	17	empty
3	115	0.38	0.74	19	empty
4	51	0.35	0.79	13	empty

Compared structures

2JYN · A novel solution NMR structure of protein yst0336 from Saccharomyces cerevisiae.… · the same entry in another collection · chain A against A, TM-score 1.00
Q08971 · AlphaFold monomer V2.0 prediction for protein PBDC1 homolog (Q08971) · a predicted model of the same protein · chain A against A, TM-score 0.86

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q08971
Elsewhere: RCSB PDB 2JYN · PDBe 2JYN · UniProt Q08971

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