Research workbench
NMR structure of a 21 bp DNA duplex preferentially cleaved by human topoisomerase II
Analyse NMR structure of a 21 bp DNA duplex preferentially cleaved by human… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2JYK
- Type
- DNA
- Length
- 42 nucleotides
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'- D(*DAP*DCP*DAP*DGP*DCP*DTP*DTP*DAP*DTP*DCP*DAP*DTP*DCP*DGP*DAP*DTP*DC…
Structure
solution nmr · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA (5'- D(*DAP*DCP*DAP*DGP*DCP*DTP*DTP*DAP*DTP*DCP*DAP*DTP*DCP*DGP*DAP*DTP*DC P*DAP*DCP*DGP*DT)-3') | dna | 21 | — | — |
| B | DNA (5'- D(*DAP*DCP*DGP*DTP*DGP*DAP*DTP*DCP*DGP*DAP*DTP*DGP*DAP*DTP*DAP*DAP*DG P*DCP*DTP*DGP*DT)-3') | dna | 21 | — | — |
Interfaces
1 interface between chains.
- A–B · 1014 Ų buried · 134 hydrogen bonds · nucleic-nucleic
Compared structures
- 2JYK · NMR Structure of a 21 bp DNA duplex preferentially cleaved by Human Topoisomerase II · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2JYK · PDBe 2JYK
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