Research workbench
Rigid-body refinement of the tetraloop-receptor RNA complex
Analyse Rigid-body refinement of the tetraloop-receptor RNA complex in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2JYH
- Type
- RNA
- Length
- 86 nucleotides
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA (43-mer)
- Pockets
- 3 · best druggability 0.59
Structure
solution nmr · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | RNA (43-mer) | rna | 43 | — | — |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 308 | 0.59 | 0.78 | 19 | empty |
| 2 | 294 | 0.58 | 0.78 | 18 | empty |
| 3 | 71 | 0.29 | 0.74 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 568 Ų buried · 9 hydrogen bonds · nucleic-nucleic
Compared structures
- 2JYH · Rigid-body refinement of the tetraloop-receptor RNA complex · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2JYH · PDBe 2JYH
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