Research workbench
NMR structure of putative tRNA hydrolase domain from salmonella typhimurium. northeast structural genomics consortium target STR220
Analyse NMR structure of putative tRNA hydrolase domain from salmonella typhimurium.… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2JY9
- Type
- protein
- Length
- 148 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative tRNA hydrolase domain
- UniProt
- Q8ZRN3
- Pockets
- 2 · best druggability 0.56
Structure
solution nmr · 1 distinct chain · 20% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative tRNA hydrolase domain | protein | 148 | 20% helix, 13% strand | Q8ZRN3 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 70 | 0.56 | 0.87 | 18 | empty |
| 2 | 160 | 0.45 | 0.75 | 24 | empty |
Compared structures
- 2JY9 · NMR structure of putative tRNA hydrolase domain from Salmonella typhimurium. NorthEast… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8ZRN3
- Elsewhere: RCSB PDB 2JY9 · PDBe 2JY9 · UniProt Q8ZRN3
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