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Solution structure of stereo-array isotope labelled (sail) C-terminal dimerization domain of SARS coronavirus nucleocapsid protein
Analyse Solution structure of stereo-array isotope labelled (sail) C-terminal… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2JW8
- Type
- protein
- Length
- 236 residues
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Nucleocapsid protein
- UniProt
- P59595
- Pockets
- 5 · best druggability 0.74
Structure
solution nmr · 1 distinct chain · 34% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Nucleocapsid protein | protein | 118 | 34% helix, 14% strand | P59595 |
Pockets
5 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 115 | 0.74 | 0.94 | 27 | empty |
| 2 | 82 | 0.68 | 0.93 | 25 | empty |
| 3 | 67 | 0.55 | 0.87 | 20 | empty |
| 4 | 226 | 0.51 | 0.76 | 33 | empty |
| 5 | 159 | 0.44 | 0.75 | 28 | empty |
Interfaces
1 interface between chains.
- A–B · 2645 Ų buried · 29 hydrogen bonds · protein-protein
Compared structures
- 2JW8 · Solution structure of stereo-array isotope labelled (SAIL) C-terminal dimerization domain… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P59595
- Elsewhere: RCSB PDB 2JW8 · PDBe 2JW8 · UniProt P59595
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