Research workbench

3D structure and backbone dynamics of spe B

Analyse 3D structure and backbone dynamics of spe B in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2JTC
Type: protein
Length: 253 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Streptopain
EC: 3.4.22.10
UniProt: P0C0J1
Pockets: 1 · best druggability 0.56

Structure

solution nmr · 1 distinct chain · 26% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Streptopain (EC 3.4.22.10)	protein	253	26% helix, 18% strand	P0C0J1

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	180	0.56	0.81	34	empty

Compared structures

2JTC · 3D structure and backbone dynamics of SPE B · the same entry in another collection · chain A against A, TM-score 1.00
P0C0J1 · AlphaFold monomer V2.0 prediction for streptopain (P0C0J1) · a predicted model of the same protein · chain A against A, TM-score 0.91

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0C0J1
Elsewhere: RCSB PDB 2JTC · PDBe 2JTC · UniProt P0C0J1

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.