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Solution structure of the atypical PDZ-like domain of synbindin

Analyse Solution structure of the atypical PDZ-like domain of synbindin in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2JSN
Type: protein
Length: 96 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Trafficking protein particle complex subunit 4
UniProt: Q9Y296
Pockets: 1 · best druggability 0.32

Structure

solution nmr · 1 distinct chain · 9% helix, 31% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Trafficking protein particle complex subunit 4	protein	96	9% helix, 31% strand	Q9Y296

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	61	0.32	0.76	16	empty

Compared structures

2JSN · Solution structure of the atypical PDZ-like domain of synbindin · the same entry in another collection · chain A against A, TM-score 1.00
Q9Y296 · AlphaFold monomer V2.0 prediction for trafficking protein particle complex subunit 4… · a predicted model of the same protein · chain A against A, TM-score 0.75

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9Y296
Elsewhere: RCSB PDB 2JSN · PDBe 2JSN · UniProt Q9Y296

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