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Solution structure of RPA3114, a sec-C motif containing protein from rhodopseudomonas palustris; northeast structural genomics consortium target RPT5 / ontario center for structural proteomics target RP3097
Analyse Solution structure of RPA3114, a sec-C motif containing protein from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2JQ5
- Type
- protein
- Length
- 128 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Sec-C motif
- UniProt
- Q6N568
- Ligands
- ZN
- Pockets
- 2 · best druggability 0.69
Structure
solution nmr · 1 distinct chain · 33% helix, 38% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Sec-C motif | protein | 128 | 33% helix, 38% strand | Q6N568 |
Ligands and binding sites
- ZN · Zinc ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 234 | 0.69 | 0.84 | 26 | empty |
| 2 | 69 | 0.37 | 0.78 | 13 | empty |
Compared structures
- 2JQ5 · Solution structure of RPA3114, a SEC-C motif containing protein from Rhodopseudomonas… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6N568
- Elsewhere: RCSB PDB 2JQ5 · PDBe 2JQ5 · UniProt Q6N568
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