Research workbench
Solution structure of the adhesion protein BD37 from babesia divergens
Analyse Solution structure of the adhesion protein BD37 from babesia divergens in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2JO7
- Type
- protein
- Length
- 224 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glycosylphosphatidylinositol-anchored merozoite surface protein
- UniProt
- Q8T117
- Pockets
- 5 · best druggability 0.52
Structure
solution nmr · 1 distinct chain · 70% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glycosylphosphatidylinositol-anchored merozoite surface protein | protein | 224 | 70% helix, 0% strand | Q8T117 |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 199 | 0.52 | 0.77 | 28 | empty |
| 2 | 67 | 0.48 | 0.84 | 14 | empty |
| 3 | 97 | 0.45 | 0.79 | 18 | empty |
| 4 | 74 | 0.36 | 0.77 | 17 | empty |
| 5 | 62 | 0.32 | 0.76 | 16 | empty |
Compared structures
- 2JO7 · Solution structure of the adhesion protein Bd37 from Babesia divergens · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8T117
- Elsewhere: RCSB PDB 2JO7 · PDBe 2JO7 · UniProt Q8T117
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