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Low resolution structure of spt
Analyse Low resolution structure of spt in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2JGT
- Type
- protein
- Length
- 732 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Serine palmitoyltransferase
- EC
- 2.3.1.50
- UniProt
- Q93UV0
- Pockets
- 5 · best druggability 0.82
Structure
x-ray diffraction · 2 distinct chains · 35% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Serine palmitoyltransferase (EC 2.3.1.50) | protein | 369 | 36% helix, 20% strand | Q93UV0 |
| B | Serine palmitoyltransferase (EC 2.3.1.50) | protein | 363 | 35% helix, 20% strand | Q93UV0 |
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 914 | 0.82 | 0.83 | 85 | empty |
| 2 | 601 | 0.76 | 0.82 | 75 | empty |
| 3 | 256 | 0.67 | 0.83 | 37 | empty |
| 4 | 74 | 0.46 | 0.82 | 15 | empty |
| 5 | 53 | 0.35 | 0.78 | 13 | empty |
Interfaces
1 interface between chains.
- A–B · 1710 Ų buried · 9 hydrogen bonds · protein-protein
Compared structures
- 2JGT · Low resolution structure of SPT · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q93UV0
- Elsewhere: RCSB PDB 2JGT · PDBe 2JGT · UniProt Q93UV0
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