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Structure of the TYCC5-6 pcp-C bidomain of the tyrocidine synthetase tycc

Analyse Structure of the TYCC5-6 pcp-C bidomain of the tyrocidine synthetase tycc in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2JGP
Type: protein
Length: 520 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Tyrocidine synthetase 3
UniProt: O30409
Ligands: NA, SO4
Pockets: 5 · best druggability 0.74

Structure

x-ray diffraction · 1 distinct chain · 40% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Tyrocidine synthetase 3	protein	520	40% helix, 19% strand	O30409

Ligands and binding sites

NA · Sodium ion · metal · chains A
SO4 · Sulfate ion · ion · 2 copies · chains A
DIO · 1,4-diethylene dioxide · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

5 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	213	0.74	0.89	51	empty
2	573	0.72	0.80	46	SO4
3	230	0.65	0.83	34	DIO
4	79	0.52	0.84	17	empty
5	149	0.49	0.78	21	empty

Compared structures

2JGP · Structure of the TycC5-6 PCP-C bidomain of the tyrocidine synthetase TycC · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O30409
Elsewhere: RCSB PDB 2JGP · PDBe 2JGP · UniProt O30409

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