Research workbench
Crystal structure of a 3-methyladenine DNA glycosylase I from staphylococcus aureus
Analyse Crystal structure of a 3-methyladenine DNA glycosylase I from staphylococcus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2JG6
- Type
- protein
- Length
- 186 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA-3-methyladenine glycosidase
- EC
- 3.2.2.20
- UniProt
- Q9RL93
- Ligands
- ZN
- Pockets
- 2 · best druggability 0.42
Structure
x-ray diffraction · 1 distinct chain · 55% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA-3-methyladenine glycosidase (EC 3.2.2.20) | protein | 186 | 55% helix, 2% strand | Q9RL93 |
Ligands and binding sites
- ZN · Zinc ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 127 | 0.42 | 0.76 | 21 | empty |
| 2 | 56 | 0.37 | 0.79 | 17 | empty |
Compared structures
- 2JG6 · Crystal structure of a 3-methyladenine DNA glycosylase I from staphylococcus aureus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9RL93
- Elsewhere: RCSB PDB 2JG6 · PDBe 2JG6 · UniProt Q9RL93
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