Research workbench
Crystal structure of a putative phosphofructokinase from staphylococcus aureus
Analyse Crystal structure of a putative phosphofructokinase from staphylococcus aureus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2JG5
- Type
- protein
- Length
- 612 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Fructose 1-phosphate kinase
- EC
- 2.7.1.56
- UniProt
- Q9KWK1
- Pockets
- 5 · best druggability 0.64
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Fructose 1-phosphate kinase (EC 2.7.1.56) | protein | 306 | 39% helix, 25% strand | Q9KWK1 |
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 452 | 0.64 | 0.78 | 55 | empty |
| 2 | 391 | 0.60 | 0.76 | 62 | empty |
| 3 | 100 | 0.51 | 0.82 | 24 | empty |
| 4 | 73 | 0.34 | 0.76 | 16 | empty |
| 5 | 50 | 0.30 | 0.77 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 1344 Ų buried · 20 hydrogen bonds · protein-protein
Compared structures
- 2JG5 · Crystal structure of a putative phosphofructokinase from staphylococcus aureus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9KWK1
- Elsewhere: RCSB PDB 2JG5 · PDBe 2JG5 · UniProt Q9KWK1
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.