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Xray structure of E. COLI yiiu

Analyse Xray structure of E. COLI yiiu in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2JEE
Type: protein
Length: 312 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cell division protein zapb
UniProt: P0AF36
Pockets: 1 · best druggability 0.27

Structure

x-ray diffraction · 1 distinct chain · 95% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D	Cell division protein zapb	protein	78	95% helix, 0% strand	P0AF36

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	51	0.27	0.74	14	empty

Interfaces

3 interfaces between chains.

C–D · 2236 Å² buried · 7 hydrogen bonds · protein-protein
A–B · 2233 Å² buried · 8 hydrogen bonds · protein-protein
A–C · 559 Å² buried · 5 hydrogen bonds · protein-protein

Compared structures

2JEE · Xray structure of E. coli YiiU · the same entry in another collection · chain A against A, TM-score 1.00
P0AF36 · AlphaFold monomer V2.0 prediction for cell division protein zapb (P0AF36) · a predicted model of the same protein · chain A against A, TM-score 0.89

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0AF36
Elsewhere: RCSB PDB 2JEE · PDBe 2JEE · UniProt P0AF36

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