Research workbench
Crystal structure of CD5 domain III reveals the fold of a group B scavenger cysteine-rich receptor
Analyse Crystal structure of CD5 domain III reveals the fold of a group B scavenger… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2JA4
- Type
- protein
- Length
- 101 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- T-cell surface glycoprotein CD5
- UniProt
- P06127
- Pockets
- 1 · best druggability 0.32
Structure
x-ray diffraction · 1 distinct chain · 12% helix, 35% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | T-cell surface glycoprotein CD5 | protein | 101 | 12% helix, 35% strand | P06127 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 50 | 0.32 | 0.78 | 16 | empty |
Modifications
Observed in the structure: 4 disulfide (disulfide).
Compared structures
- 2JA4 · Crystal structure of CD5 domain III reveals the fold of a group B scavenger cysteine-rich… · the same entry in another collection · chain A against A, TM-score 1.00
- P06127 · AlphaFold monomer V2.0 prediction for T-cell surface glycoprotein CD5 (P06127) · a predicted model of the same protein · chain A against A, TM-score 0.90
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P06127
- Elsewhere: RCSB PDB 2JA4 · PDBe 2JA4 · UniProt P06127
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.