Research workbench
Cytoplasmic domain of the human chloride transporter clc-5 in complex with ATP
Analyse Cytoplasmic domain of the human chloride transporter clc-5 in complex with ATP in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2J9L
- Type
- protein
- Length
- 1,010 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Chloride channel protein 5
- UniProt
- P51795
- Ligands
- ATP, CL
- Pockets
- 14 · best druggability 0.74
Structure
x-ray diffraction · 5 distinct chains · 33% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, E | Chloride channel protein 5 | protein | 167 | 31% helix, 25% strand | P51795 |
| B | Chloride channel protein 5 | protein | 171 | 35% helix, 24% strand | P51795 |
| C | Chloride channel protein 5 | protein | 172 | 34% helix, 24% strand | P51795 |
| D | Chloride channel protein 5 | protein | 171 | 35% helix, 24% strand | P51795 |
| F | Chloride channel protein 5 | protein | 162 | 30% helix, 25% strand | P51795 |
Ligands and binding sites
- ATP · Adenosine-5'-triphosphate · ligand · 6 copies · chains A, B, C, D, E, F
- CL · Chloride ion · ion · 10 copies · chains A, B, C, D, E, F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
14 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 318 | 0.74 | 0.86 | 66 | empty |
| 2 | 438 | 0.72 | 0.82 | 54 | empty |
| 3 | 515 | 0.72 | 0.81 | 47 | empty |
| 4 | 281 | 0.70 | 0.84 | 59 | empty |
| 5 | 123 | 0.70 | 0.91 | 29 | empty |
Interfaces
10 interfaces between chains.
- C–D · 894 Ų buried · 13 hydrogen bonds · protein-protein
- E–F · 864 Ų buried · 8 hydrogen bonds · protein-protein
- A–B · 863 Ų buried · 11 hydrogen bonds · protein-protein
- B–D · 459 Ų buried · 2 hydrogen bonds · protein-protein
- A–C · 404 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
- 2J9L · Cytoplasmic Domain of the Human Chloride Transporter ClC-5 in complex with ATP · the same entry in another collection · chain F against F, TM-score 1.00
- P51795 · AlphaFold monomer V2.0 prediction for H(+)/CL(-) exchange transporter 5 (P51795) · a predicted model of the same protein · chain E against A, TM-score 0.92
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P51795
- Elsewhere: RCSB PDB 2J9L · PDBe 2J9L · UniProt P51795
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