Research workbench
Atypical polyproline recognition by the cms N-terminal SH3 domain. CMS:CD2 heterodimer
Analyse Atypical polyproline recognition by the cms N-terminal SH3 domain. CMS:CD2… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2J7I
- Type
- protein
- Length
- 134 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- CD2-associated protein; T-cell surface antigen CD2
- UniProt
- Q9Y5K6, P06729
- Pockets
- 1 · best druggability 0.34
Structure
x-ray diffraction · 4 distinct chains · 2% helix, 40% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | CD2-associated protein | protein | 58 | 0% helix, 45% strand | Q9Y5K6 |
| B | CD2-associated protein | protein | 57 | 5% helix, 49% strand | Q9Y5K6 |
| C | T-cell surface antigen CD2 | protein | 9 | 0% helix, 0% strand | P06729 |
| D | T-cell surface antigen CD2 | protein | 10 | 0% helix, 0% strand | P06729 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 87 | 0.34 | 0.74 | 15 | empty |
Interfaces
4 interfaces between chains.
- A–C · 460 Ų buried · 9 hydrogen bonds · protein-protein
- B–D · 455 Ų buried · 10 hydrogen bonds · protein-protein
- B–C · 209 Ų buried · 3 hydrogen bonds · protein-protein
- A–B · 88 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
- 2J7I · Atypical polyproline recognition by the cms N-terminal SH3 domain. CMS:CD2 heterodimer · the same entry in another collection · chain D against D, TM-score 1.00
- Q9Y5K6 · AlphaFold monomer V2.0 prediction for CD2-associated protein (Q9Y5K6) · a predicted model of the same protein · chain A against A, TM-score 0.96
- P06729 · AlphaFold monomer V2.0 prediction for T-cell surface antigen CD2 (P06729) · a predicted model of the same protein · chain C against A, TM-score 0.55
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9Y5K6
- Every structure of UniProt P06729
- Elsewhere: RCSB PDB 2J7I · PDBe 2J7I · UniProt Q9Y5K6 · UniProt P06729
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