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Faeg from F4AC etec strain GIS26, produced in tobacco plant chloroplast

Analyse Faeg from F4AC etec strain GIS26, produced in tobacco plant chloroplast in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2J6R
Type: protein
Length: 509 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: K88 fimbrial protein
UniProt: Q708I8
Ligands: PO4
Pockets: 3 · best druggability 0.71

Structure

x-ray diffraction · 2 distinct chains · 10% helix, 46% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	K88 fimbrial protein	protein	256	10% helix, 46% strand	Q708I8
B	K88 fimbrial protein	protein	253	10% helix, 47% strand	Q708I8

Ligands and binding sites

PO4 · Phosphate ion · ion · 5 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	535	0.71	0.80	64	empty
2	66	0.35	0.77	20	empty
3	54	0.25	0.73	13	empty

Interfaces

1 interface between chains.

A–B · 2341 Å² buried · 41 hydrogen bonds · protein-protein

Compared structures

2J6R · FaeG from F4ac ETEC strain GIS26, produced in tobacco plant chloroplast · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q708I8
Elsewhere: RCSB PDB 2J6R · PDBe 2J6R · UniProt Q708I8

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