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Low quality crystal structure of the transport component C2- II of the C2-toxin from clostridium botulinum
Analyse Low quality crystal structure of the transport component C2- II of the C2-toxin… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2J42
- Type
- protein
- Length
- 504 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- C2 toxin component-II
- UniProt
- O86171
- Pockets
- 10 · best druggability 0.64
Structure
x-ray diffraction · 1 distinct chain · 12% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | C2 toxin component-II | protein | 504 | 12% helix, 21% strand | O86171 |
Pockets
10 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 160 | 0.64 | 0.85 | 36 | empty |
| 2 | 319 | 0.62 | 0.79 | 46 | empty |
| 3 | 117 | 0.61 | 0.87 | 28 | empty |
| 4 | 217 | 0.50 | 0.76 | 25 | empty |
| 5 | 166 | 0.48 | 0.77 | 32 | empty |
Compared structures
- 2J42 · low quality crystal structure of the transport component C2-II of the C2-toxin from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O86171
- Elsewhere: RCSB PDB 2J42 · PDBe 2J42 · UniProt O86171
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