Research workbench
Crystal structure of arabidopsis thaliana double bond reductase (AT5G16970)-apo form
Analyse Crystal structure of arabidopsis thaliana double bond reductase (AT5G16970)-apo… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2J3H
- Type
- protein
- Length
- 681 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- NADP-dependent oxidoreductase P1
- UniProt
- Q39172
- Pockets
- 4 · best druggability 0.79
Structure
x-ray diffraction · 2 distinct chains · 28% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | NADP-dependent oxidoreductase P1 | protein | 336 | 29% helix, 29% strand | Q39172 |
| B | NADP-dependent oxidoreductase P1 | protein | 345 | 27% helix, 28% strand | Q39172 |
Pockets
4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 619 | 0.79 | 0.84 | 66 | empty |
| 2 | 732 | 0.77 | 0.82 | 69 | empty |
| 3 | 185 | 0.54 | 0.80 | 22 | empty |
| 4 | 62 | 0.28 | 0.73 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 1293 Ų buried · 17 hydrogen bonds · protein-protein
Compared structures
- 2J3H · Crystal structure of Arabidopsis thaliana Double Bond Reductase (AT5G16970)-Apo form · the same entry in another collection · chain A against A, TM-score 1.00
- Q39172 · AlphaFold monomer V2.0 prediction for NADPH-dependent oxidoreductase 2-alkenal reductase… · a predicted model of the same protein · chain B against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q39172
- Elsewhere: RCSB PDB 2J3H · PDBe 2J3H · UniProt Q39172
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