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Desulforedoxin complexed with CD2+

Analyse Desulforedoxin complexed with CD2+ in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1DCD
Type: protein
Length: 72 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protein (desulforedoxin)
UniProt: P00273
Ligands: CD

Structure

x-ray diffraction · 1 distinct chain · 0% helix, 42% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Protein (desulforedoxin)	protein	36	0% helix, 42% strand	P00273

Ligands and binding sites

CD · Cadmium ion · metal · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 749 Å² buried · 17 hydrogen bonds · protein-protein

Compared structures

1DCD · Desulforedoxin complexed with CD2+ · the same entry in another collection · chain A against A, TM-score 1.00
P00273 · AlphaFold monomer V2.0 prediction for desulforedoxin (P00273) · a predicted model of the same protein · chain A against A, TM-score 0.96

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P00273
Elsewhere: RCSB PDB 1DCD · PDBe 1DCD · UniProt P00273

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