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A proteolytically truncated form of shigella flexneri ipad

Analyse A proteolytically truncated form of shigella flexneri ipad in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2J0N
Type: protein
Length: 358 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Invasin ipad
UniProt: P18013
Pockets: 3 · best druggability 0.53

Structure

x-ray diffraction · 2 distinct chains · 63% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Invasin ipad	protein	171	61% helix, 16% strand	P18013
B	Invasin ipad	protein	187	64% helix, 13% strand	P18013

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	144	0.53	0.80	25	empty
2	56	0.30	0.76	20	empty
3	58	0.29	0.75	12	empty

Interfaces

1 interface between chains.

A–B · 1565 Å² buried · 15 hydrogen bonds · protein-protein

Compared structures

2J0N · A proteolytically truncated form of Shigella Flexneri IpaD · the same entry in another collection · chain A against A, TM-score 1.00
P18013 · AlphaFold monomer V2.0 prediction for invasin ipad (P18013) · a predicted model of the same protein · chain A against A, TM-score 0.96

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P18013
Elsewhere: RCSB PDB 2J0N · PDBe 2J0N · UniProt P18013

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