Research workbench
Function and structure of the molybdenum cofactor carrier protein mcp from chlamydomonas reinhardtii
Analyse Function and structure of the molybdenum cofactor carrier protein mcp from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2IZ5
- Type
- protein
- Length
- 639 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Moco carrier protein
- UniProt
- Q8RV61
- Pockets
- 6 · best druggability 0.64
Structure
x-ray diffraction · 4 distinct chains · 43% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Moco carrier protein | protein | 160 | 44% helix, 20% strand | Q8RV61 |
| B | Moco carrier protein | protein | 161 | 42% helix, 20% strand | Q8RV61 |
| C | Moco carrier protein | protein | 158 | 44% helix, 20% strand | Q8RV61 |
| D | Moco carrier protein | protein | 160 | 42% helix, 20% strand | Q8RV61 |
Pockets
6 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 330 | 0.64 | 0.80 | 38 | empty |
| 2 | 243 | 0.62 | 0.81 | 34 | empty |
| 3 | 225 | 0.59 | 0.80 | 35 | empty |
| 4 | 236 | 0.58 | 0.79 | 30 | empty |
| 5 | 96 | 0.35 | 0.74 | 19 | empty |
Interfaces
6 interfaces between chains.
- B–C · 836 Ų buried · 2 hydrogen bonds · protein-protein
- A–B · 834 Ų buried · 10 hydrogen bonds · protein-protein
- A–D · 780 Ų buried · 1 hydrogen bond · protein-protein
- C–D · 701 Ų buried · 9 hydrogen bonds · protein-protein
- A–C · 178 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
- 2IZ5 · Function and structure of the molybdenum cofactor carrier protein mcp from chlamydomonas… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8RV61
- Elsewhere: RCSB PDB 2IZ5 · PDBe 2IZ5 · UniProt Q8RV61
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.