Research workbench
Crystal structure of the a-subunit of the AB5 toxin from E. COLI
Analyse Crystal structure of the a-subunit of the AB5 toxin from E. COLI in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2IY9
- Type
- protein
- Length
- 309 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Suba
- UniProt
- Q6EZC2
- Pockets
- 2 · best druggability 0.44
Structure
x-ray diffraction · 1 distinct chain · 33% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Suba | protein | 309 | 33% helix, 20% strand | Q6EZC2 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 140 | 0.44 | 0.76 | 22 | empty |
| 2 | 132 | 0.40 | 0.74 | 24 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 2IY9 · Crystal structure of the A-subunit of the AB5 toxin from E. coli · the same entry in another collection · chain A against A, TM-score 1.00
- Q6EZC2 · AlphaFold monomer V2.0 prediction for subtilase cytotoxin subunit a (Q6EZC2) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6EZC2
- Elsewhere: RCSB PDB 2IY9 · PDBe 2IY9 · UniProt Q6EZC2
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