Research workbench
Model for EEF3 bound to an 80S ribosome
Analyse Model for EEF3 bound to an 80S ribosome in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2IX8
- Type
- protein
- Length
- 975 residues
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Elongation factor 3A
- UniProt
- P16521
- Pockets
- 12 · best druggability 0.76
Structure
electron microscopy · 1 distinct chain · 44% helix, 9% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Elongation factor 3A | protein | 975 | 44% helix, 9% strand | P16521 |
Pockets
12 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 715 | 0.76 | 0.81 | 90 | empty |
| 2 | 653 | 0.74 | 0.81 | 72 | empty |
| 3 | 875 | 0.74 | 0.78 | 104 | empty |
| 4 | 567 | 0.70 | 0.79 | 74 | empty |
| 5 | 291 | 0.62 | 0.80 | 45 | empty |
Modifications
Observed in the structure: 22 modified, 2 isopeptide (engineered, isopeptide).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P16521
- Elsewhere: RCSB PDB 2IX8 · PDBe 2IX8 · UniProt P16521
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