Research workbench
Crystal structure of protein XCC0632 from xanthomonas campestris, pfam DUF330
Analyse Crystal structure of protein XCC0632 from xanthomonas campestris, pfam DUF330 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2IQI
- Type
- protein
- Length
- 1,375 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein XCC0632
- UniProt
- Q8PCT0
- Pockets
- 18 · best druggability 0.79
Structure
x-ray diffraction · 4 distinct chains · 26% helix, 35% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical protein XCC0632 | protein | 173 | 26% helix, 33% strand | Q8PCT0 |
| B, C, D, E, H | Hypothetical protein XCC0632 | protein | 171 | 27% helix, 33% strand | Q8PCT0 |
| F | Hypothetical protein XCC0632 | protein | 175 | 26% helix, 40% strand | Q8PCT0 |
| G | Hypothetical protein XCC0632 | protein | 172 | 26% helix, 36% strand | Q8PCT0 |
Pockets
18 pockets found on a 1 Å grid, 8 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 173 | 0.79 | 0.95 | 30 | empty |
| 2 | 175 | 0.78 | 0.94 | 28 | empty |
| 3 | 169 | 0.77 | 0.94 | 27 | empty |
| 4 | 176 | 0.77 | 0.93 | 29 | empty |
| 5 | 167 | 0.76 | 0.93 | 28 | empty |
Interfaces
6 interfaces between chains.
- F–G · 814 Ų buried · 18 hydrogen bonds · protein-protein
- G–H · 732 Ų buried · 18 hydrogen bonds · protein-protein
- C–D · 722 Ų buried · 15 hydrogen bonds · protein-protein
- E–F · 712 Ų buried · 18 hydrogen bonds · protein-protein
- B–C · 689 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 2IQI · Crystal structure of protein XCC0632 from Xanthomonas campestris, Pfam DUF330 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8PCT0
- Elsewhere: RCSB PDB 2IQI · PDBe 2IQI · UniProt Q8PCT0
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