Research workbench
The structure of a putative mode from agrobacterium tumefaciens.
Analyse The structure of a putative mode from agrobacterium tumefaciens. in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2IJL
- Type
- protein
- Length
- 219 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Molybdenum-binding transcriptional repressor
- UniProt
- Q8UCD4
- Ligands
- SO4
Structure
x-ray diffraction · 2 distinct chains · 59% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Molybdenum-binding transcriptional repressor | protein | 110 | 58% helix, 17% strand | Q8UCD4 |
| B | Molybdenum-binding transcriptional repressor | protein | 109 | 60% helix, 17% strand | Q8UCD4 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 8 copies · chains A, B
- EDO · 1,2-ethanediol · additive · 6 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 1828 Ų buried · 31 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 12 modified (engineered).
Compared structures
- 2IJL · The structure of a putative ModE from Agrobacterium tumefaciens. · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8UCD4
- Elsewhere: RCSB PDB 2IJL · PDBe 2IJL · UniProt Q8UCD4
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