Research workbench
Structure of a conserved protein of unknown function PA0269 from pseudomonas aeruginosa
Analyse Structure of a conserved protein of unknown function PA0269 from pseudomonas… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2IJC
- Type
- protein
- Length
- 1,284 residues
- Chains
- 9
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein
- UniProt
- Q9I6M1
- Pockets
- 15 · best druggability 0.74
Structure
x-ray diffraction · 4 distinct chains · 73% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical protein | protein | 143 | 74% helix, 0% strand | Q9I6M1 |
| B, C, D, E, G, H | Hypothetical protein | protein | 142 | 74% helix, 0% strand | Q9I6M1 |
| F | Hypothetical protein | protein | 144 | 74% helix, 1% strand | Q9I6M1 |
| I | Hypothetical protein | protein | 145 | 71% helix, 1% strand | Q9I6M1 |
Pockets
15 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1124 | 0.74 | 0.77 | 101 | empty |
| 2 | 481 | 0.72 | 0.82 | 64 | empty |
| 3 | 626 | 0.70 | 0.78 | 75 | empty |
| 4 | 349 | 0.65 | 0.80 | 47 | empty |
| 5 | 104 | 0.43 | 0.77 | 19 | empty |
Interfaces
19 interfaces between chains.
- B–C · 1909 Ų buried · 21 hydrogen bonds · protein-protein
- G–H · 1907 Ų buried · 20 hydrogen bonds · protein-protein
- D–E · 1899 Ų buried · 21 hydrogen bonds · protein-protein
- A–F · 1881 Ų buried · 20 hydrogen bonds · protein-protein
- D–F · 907 Ų buried · 14 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 38 modified (engineered).
Compared structures
- 2IJC · Structure of a Conserved Protein of Unknown Function PA0269 from Pseudomonas aeruginosa · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9I6M1
- Elsewhere: RCSB PDB 2IJC · PDBe 2IJC · UniProt Q9I6M1
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