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Anabaena sensory rhodopsin transducer

Analyse Anabaena sensory rhodopsin transducer in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2II9
Type: protein
Length: 371 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Sensory rhodopsin transducer protein
UniProt: Q8YSC3
Pockets: 1 · best druggability 0.53

Structure

x-ray diffraction · 3 distinct chains · 3% helix, 55% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Sensory rhodopsin transducer protein	protein	92	3% helix, 57% strand	Q8YSC3
C	Sensory rhodopsin transducer protein	protein	93	3% helix, 56% strand	Q8YSC3
D	Sensory rhodopsin transducer protein	protein	94	3% helix, 52% strand	Q8YSC3

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	397	0.53	0.72	43	empty

Interfaces

4 interfaces between chains.

A–D · 708 Å² buried · 10 hydrogen bonds · protein-protein
B–D · 704 Å² buried · 9 hydrogen bonds · protein-protein
B–C · 704 Å² buried · 12 hydrogen bonds · protein-protein
A–C · 696 Å² buried · 10 hydrogen bonds · protein-protein

Compared structures

2II9 · Anabaena sensory rhodopsin transducer · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8YSC3
Elsewhere: RCSB PDB 2II9 · PDBe 2II9 · UniProt Q8YSC3

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