Research workbench
The structure of bordetella pertussis virulence factor P.69 pertactin
Analyse The structure of bordetella pertussis virulence factor P.69 pertactin in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1DAB
- Type
- protein
- Length
- 539 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- P.69 pertactin
- UniProt
- P14283
- Pockets
- 3 · best druggability 0.56
Structure
x-ray diffraction · 1 distinct chain · 2% helix, 54% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | P.69 pertactin | protein | 539 | 2% helix, 54% strand | P14283 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 298 | 0.56 | 0.77 | 38 | empty |
| 2 | 154 | 0.44 | 0.75 | 25 | empty |
| 3 | 88 | 0.40 | 0.78 | 25 | empty |
Compared structures
- 1DAB · The Structure of Bordetella Pertussis Virulence Factor P.69 Pertactin · the same entry in another collection · chain A against A, TM-score 1.00
- P14283 · AlphaFold monomer V2.0 prediction for pertactin autotransporter (P14283) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P14283
- Elsewhere: RCSB PDB 1DAB · PDBe 1DAB · UniProt P14283
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.