Research workbench
Core structure of S2 from the human coronavirus NL63 spike glycoprotein
Analyse Core structure of S2 from the human coronavirus NL63 spike glycoprotein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2IEQ
- Type
- protein
- Length
- 265 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Spike glycoprotein
- UniProt
- Q6Q1S2
- Ligands
- NA
Structure
x-ray diffraction · 3 distinct chains · 89% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Spike glycoprotein | protein | 88 | 88% helix, 0% strand | Q6Q1S2 |
| B | Spike glycoprotein | protein | 89 | 90% helix, 0% strand | Q6Q1S2 |
| C | Spike glycoprotein | protein | 88 | 91% helix, 0% strand | Q6Q1S2 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
3 interfaces between chains.
- A–B · 1410 Ų buried · 11 hydrogen bonds · protein-protein
- B–C · 1397 Ų buried · 10 hydrogen bonds · protein-protein
- A–C · 1374 Ų buried · 11 hydrogen bonds · protein-protein
Compared structures
- 2IEQ · Core Structure of S2 from the Human Coronavirus NL63 Spike Glycoprotein · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6Q1S2
- Elsewhere: RCSB PDB 2IEQ · PDBe 2IEQ · UniProt Q6Q1S2
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