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Crystal structure of conserved protein of unknown function from streptococcus pneumoniae

Analyse Crystal structure of conserved protein of unknown function from streptococcus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2IDL
Type: protein
Length: 229 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Hypothetical protein
UniProt: Q97QU3
Ligands: NA
Pockets: 3 · best druggability 0.74

Structure

x-ray diffraction · 2 distinct chains · 41% helix, 27% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Hypothetical protein	protein	113	42% helix, 27% strand	Q97QU3
B	Hypothetical protein	protein	116	41% helix, 27% strand	Q97QU3

Ligands and binding sites

NA · Sodium ion · metal · chains B
GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	55	0.74	1.00	16	empty
2	276	0.59	0.78	31	empty
3	132	0.46	0.78	22	empty

Interfaces

1 interface between chains.

A–B · 948 Å² buried · 13 hydrogen bonds · protein-protein

Compared structures

2IDL · Crystal Structure of Conserved Protein of Unknown Function from Streptococcus pneumoniae · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q97QU3
Elsewhere: RCSB PDB 2IDL · PDBe 2IDL · UniProt Q97QU3

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