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Structure of yeast cpsf-100 (YDH1P)

Analyse Structure of yeast cpsf-100 (YDH1P) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2I7X
Type: protein
Length: 499 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protein CFT2
UniProt: Q12102
Pockets: 3 · best druggability 0.79

Structure

x-ray diffraction · 1 distinct chain · 31% helix, 24% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Protein CFT2	protein	499	31% helix, 24% strand	Q12102

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	340	0.79	0.89	50	empty
2	173	0.49	0.77	23	empty
3	179	0.46	0.75	31	empty

Compared structures

2I7X · Structure of Yeast CPSF-100 (Ydh1p) · the same entry in another collection · chain A against A, TM-score 1.00
Q12102 · AlphaFold monomer V2.0 prediction for cleavage factor two protein 2 (Q12102) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q12102
Elsewhere: RCSB PDB 2I7X · PDBe 2I7X · UniProt Q12102

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