Research workbench
Crystal structure of the V-type ATP synthase subunit F from archaeoglobus fulgidus. nesg target GR52A.
Analyse Crystal structure of the V-type ATP synthase subunit F from archaeoglobus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2I4R
- Type
- protein
- Length
- 159 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- V-type ATP synthase subunit F
- EC
- 3.6.3.14
- UniProt
- O29102
- Pockets
- 2 · best druggability 0.33
Structure
x-ray diffraction · 2 distinct chains · 40% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | V-type ATP synthase subunit F (EC 3.6.3.14) | protein | 79 | 37% helix, 27% strand | O29102 |
| B | V-type ATP synthase subunit F (EC 3.6.3.14) | protein | 80 | 43% helix, 26% strand | O29102 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 84 | 0.33 | 0.72 | 15 | empty |
| 2 | 52 | 0.33 | 0.78 | 14 | empty |
Interfaces
1 interface between chains.
- A–B · 278 Ų buried · 6 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 6 modified (engineered).
Compared structures
- 2I4R · Crystal structure of the V-type ATP synthase subunit F from Archaeoglobus fulgidus. NESG… · the same entry in another collection · chain A against A, TM-score 1.00
- O29102 · AlphaFold monomer V2.0 prediction for V-type ATP synthase subunit F (O29102) · a predicted model of the same protein · chain A against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O29102
- Elsewhere: RCSB PDB 2I4R · PDBe 2I4R · UniProt O29102
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