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Crystal structure analysis of the nurse shark new antigen receptor ancestral variable domain

Analyse Crystal structure analysis of the nurse shark new antigen receptor ancestral… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2I27
Type: protein
Length: 217 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: New antigen receptor ancestral
UniProt: Q8JGJ1
Pockets: 1 · best druggability 0.38

Structure

x-ray diffraction · 2 distinct chains · 6% helix, 50% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
N	New antigen receptor ancestral	protein	109	6% helix, 50% strand	Q8JGJ1
O	New antigen receptor ancestral	protein	108	6% helix, 50% strand	Q8JGJ1

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	115	0.38	0.75	29	empty

Interfaces

1 interface between chains.

N–O · 541 Å² buried · 13 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 3 disulfide (disulfide).

Compared structures

2I27 · Crystal Structure Analysis of the Nurse Shark New Antigen Receptor Ancestral variable… · the same entry in another collection · chain N against N, TM-score 1.00

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Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8JGJ1
Elsewhere: RCSB PDB 2I27 · PDBe 2I27 · UniProt Q8JGJ1

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