Research workbench
The X-ray crystal structure of ferrous synechocystis hemoglobin with a covalent linkage
Analyse The X-ray crystal structure of ferrous synechocystis hemoglobin with a covalent… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2HZ1
- Type
- protein
- Length
- 123 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cyanoglobin
- UniProt
- P73925
- Ligands
- SO2, HEM, CD, SO3
- Pockets
- 1 · best druggability 0.65
Structure
x-ray diffraction · 1 distinct chain · 76% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cyanoglobin | protein | 123 | 76% helix, 0% strand | P73925 |
Ligands and binding sites
- SO2 · Sulfur dioxide · ligand · 2 copies · chains A
- HEM · Protoporphyrin IX containing Fe · ligand · chains A
- CD · Cadmium ion · metal · 2 copies · chains A
- SO3 · Sulfite ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 249 | 0.65 | 0.82 | 30 | HEM |
Compared structures
- 2HZ1 · The x-ray crystal structure of ferrous Synechocystis hemoglobin with a covalent linkage · the same entry in another collection · chain A against A, TM-score 1.00
- P73925 · AlphaFold monomer V2.0 prediction for group 1 truncated hemoglobin glbn (P73925) · a predicted model of the same protein · chain A against A, TM-score 0.83
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P73925
- Elsewhere: RCSB PDB 2HZ1 · PDBe 2HZ1 · UniProt P73925
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