Research workbench
Crystal structure of adenylosuccinate lyase from plasmodium vivax
Analyse Crystal structure of adenylosuccinate lyase from plasmodium vivax in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2HVG
- Type
- protein
- Length
- 894 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Adenylosuccinate lyase
- EC
- 4.3.2.2
- UniProt
- Q8WSJ9
- Ligands
- SO4
- Pockets
- 10 · best druggability 0.72
Structure
x-ray diffraction · 2 distinct chains · 66% helix, 5% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Adenylosuccinate lyase (EC 4.3.2.2) | protein | 447 | 66% helix, 5% strand | Q8WSJ9 |
| B | Adenylosuccinate lyase (EC 4.3.2.2) | protein | 447 | 66% helix, 5% strand | Q8WSJ9 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 13 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
10 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 455 | 0.72 | 0.82 | 50 | empty |
| 2 | 57 | 0.69 | 0.97 | 19 | empty |
| 3 | 486 | 0.64 | 0.77 | 41 | SO4 |
| 4 | 519 | 0.64 | 0.76 | 55 | SO4 |
| 5 | 165 | 0.64 | 0.85 | 39 | SO4 |
Interfaces
1 interface between chains.
- A–B · 3899 Ų buried · 60 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 10 modified (engineered).
Compared structures
- 2HVG · Crystal Structure of Adenylosuccinate Lyase from Plasmodium Vivax · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8WSJ9
- Elsewhere: RCSB PDB 2HVG · PDBe 2HVG · UniProt Q8WSJ9
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