Research workbench
CTBP/BARS in ternary complex with NAD(H) and rrtgappal peptide
Analyse CTBP/BARS in ternary complex with NAD(H) and rrtgappal peptide in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2HU2
- Type
- protein
- Length
- 340 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- C-terminal-binding protein 1; 9-mer peptide from zinc finger protein 217
- EC
- 1.1.1.-
- UniProt
- Q9Z2F5, O75362
- Ligands
- NAD
- Pockets
- 2 · best druggability 0.71
Structure
x-ray diffraction · 2 distinct chains · 36% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | C-terminal-binding protein 1 (EC 1.1.1.-) | protein | 331 | 37% helix, 17% strand | Q9Z2F5 |
| B | 9-mer peptide from zinc finger protein 217 | protein | 9 | 0% helix, 11% strand | O75362 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 571 | 0.71 | 0.80 | 65 | NAD, FMT |
| 2 | 101 | 0.39 | 0.76 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 567 Ų buried · 13 hydrogen bonds · protein-protein
Compared structures
- 2HU2 · CTBP/BARS in ternary complex with NAD(H) and RRTGAPPAL peptide · the same entry in another collection · chain B against B, TM-score 1.00
- Q9Z2F5 · AlphaFold monomer V2.0 prediction for C-terminal-binding protein 1 (Q9Z2F5) · a predicted model of the same protein · chain A against A, TM-score 0.99
- O75362 · AlphaFold monomer V2.0 prediction for zinc finger protein 217 (O75362) · a predicted model of the same protein · chain B against A, TM-score 0.34
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9Z2F5
- Every structure of UniProt O75362
- Elsewhere: RCSB PDB 2HU2 · PDBe 2HU2 · UniProt Q9Z2F5 · UniProt O75362
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.