Research workbench
Ruthenium hexammine ion interactions with Z-DNA
Analyse Ruthenium hexammine ion interactions with Z-DNA in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2HTT
- Type
- DNA
- Length
- 16 nucleotides
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*DTP*DGP*DCP*DGP*DCP*DG)-3'); DNA (5'-D(*DCP*DGP*DCP*DGP*DCP*DA)-3'); DNA…
- Ligands
- NRU
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA (5'-D(*DTP*DGP*DCP*DGP*DCP*DG)-3') | dna | 6 | — | — |
| B | DNA (5'-D(*DCP*DGP*DCP*DGP*DCP*DA)-3') | dna | 6 | — | — |
| D, E | DNA (5'-D(P*DTP*DG)-3') | dna | 2 | — | — |
Ligands and binding sites
- NRU · Ruthenium (III) hexaamine ion · ligand · chains A, B, D, E
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
2 interfaces between chains.
- A–B · 319 Ų buried · 32 hydrogen bonds · nucleic-nucleic
- D–E · 111 Ų buried · 7 hydrogen bonds · nucleic-nucleic
Compared structures
- 2HTT · Ruthenium Hexammine ion interactions with Z-DNA · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2HTT · PDBe 2HTT
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