Research workbench
Crystal structure of fucosyltransferase nodz from bradyrhizobium
Analyse Crystal structure of fucosyltransferase nodz from bradyrhizobium in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2HLH
- Type
- protein
- Length
- 286 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Nodulation fucosyltransferase
- EC
- 2.4.1.-
- UniProt
- Q9AQ17
- Ligands
- PO4
- Pockets
- 4 · best druggability 0.40
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nodulation fucosyltransferase (EC 2.4.1.-) | protein | 286 | 45% helix, 20% strand | Q9AQ17 |
Ligands and binding sites
- PO4 · Phosphate ion · ion · 4 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 125 | 0.40 | 0.75 | 28 | PO4 |
| 2 | 94 | 0.37 | 0.75 | 13 | empty |
| 3 | 58 | 0.32 | 0.76 | 14 | empty |
| 4 | 65 | 0.31 | 0.74 | 14 | empty |
Compared structures
- 2HLH · Crystal structure of fucosyltransferase NodZ from Bradyrhizobium · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9AQ17
- Elsewhere: RCSB PDB 2HLH · PDBe 2HLH · UniProt Q9AQ17
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