Research workbench

Molecular structure of the B-DNA dodecamer D(CGCAAATTTGCG) 2; an examination of propeller twist and minor-groove water structure at 2.2 ångströms resolution

Analyse Molecular structure of the B-DNA dodecamer D(CGCAAATTTGCG) 2; an examination of… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1D65
Type: DNA
Length: 24 nucleotides
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: DNA (5'-D(*CP*GP*CP*AP*AP*AP*TP*TP*TP*GP*CP*G)- 3')

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	DNA (5'-D(CPGPCPAPAPAPTPTPTPGPCPG)- 3')	dna	12	—	—

Interfaces

1 interface between chains.

A–B · 562 Å² buried · 46 hydrogen bonds · nucleic-nucleic

Compared structures

1D65 · Molecular structure of the B-DNA dodecamer D(CGCAAATTTGCG)2; an examination of propeller… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 1D65 · PDBe 1D65

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.