Research workbench
Crystal structure of a putative dyp-type peroxidase protein (SO_0740) from shewanella oneidensis at 2.75 a resolution
Analyse Crystal structure of a putative dyp-type peroxidase protein (SO_0740) from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2HAG
- Type
- protein
- Length
- 307 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Melanin biosynthesis protein tyra, putative
- UniProt
- Q8EIU4
- Pockets
- 3 · best druggability 0.80
Structure
x-ray diffraction · 1 distinct chain · 29% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Melanin biosynthesis protein tyra, putative | protein | 307 | 29% helix, 28% strand | Q8EIU4 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 254 | 0.80 | 0.92 | 40 | empty |
| 2 | 142 | 0.59 | 0.84 | 25 | empty |
| 3 | 59 | 0.30 | 0.75 | 15 | empty |
Modifications
Observed in the structure: 12 modified (engineered).
Compared structures
- 2HAG · Crystal structure of a putative dyp-type peroxidase protein (so_0740) from shewanella… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8EIU4
- Elsewhere: RCSB PDB 2HAG · PDBe 2HAG · UniProt Q8EIU4
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