Research workbench
Crystal structure of protein SP0239 from streptococcus pneumoniae
Analyse Crystal structure of protein SP0239 from streptococcus pneumoniae in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2HA9
- Type
- protein
- Length
- 829 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- UPF0210 protein SP0239
- UniProt
- Q97ST4
- Pockets
- 5 · best druggability 0.80
Structure
x-ray diffraction · 2 distinct chains · 48% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | UPF0210 protein SP0239 | protein | 414 | 48% helix, 16% strand | Q97ST4 |
| B | UPF0210 protein SP0239 | protein | 415 | 47% helix, 16% strand | Q97ST4 |
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1157 | 0.80 | 0.81 | 84 | empty |
| 2 | 1171 | 0.77 | 0.79 | 83 | empty |
| 3 | 149 | 0.41 | 0.74 | 35 | empty |
| 4 | 62 | 0.34 | 0.76 | 11 | empty |
| 5 | 65 | 0.29 | 0.73 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 2601 Ų buried · 54 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 34 modified (engineered).
Compared structures
- 2HA9 · Crystal structure of protein SP0239 from Streptococcus pneumoniae · the same entry in another collection · chain A against A, TM-score 1.00
- Q97ST4 · AlphaFold monomer V2.0 prediction for UPF0210 protein SP_0239 (Q97ST4) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q97ST4
- Elsewhere: RCSB PDB 2HA9 · PDBe 2HA9 · UniProt Q97ST4
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