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The 1.6A crystal structure of the geranyltransferase from agrobacterium tumefaciens
Analyse The 1.6A crystal structure of the geranyltransferase from agrobacterium… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2H8O
- Type
- protein
- Length
- 283 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Geranyltranstransferase
- EC
- 2.5.1.10
- UniProt
- Q8UBX7
- Pockets
- 3 · best druggability 0.61
Structure
x-ray diffraction · 1 distinct chain · 77% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Geranyltranstransferase (EC 2.5.1.10) | protein | 283 | 77% helix, 1% strand | Q8UBX7 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 411 | 0.61 | 0.76 | 40 | empty |
| 2 | 75 | 0.45 | 0.82 | 21 | empty |
| 3 | 69 | 0.35 | 0.77 | 13 | empty |
Compared structures
- 2H8O · The 1.6A crystal structure of the geranyltransferase from Agrobacterium tumefaciens · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8UBX7
- Elsewhere: RCSB PDB 2H8O · PDBe 2H8O · UniProt Q8UBX7
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