Research workbench
Crystal structure of 4-stranded oxytricha telomeric DNA
Analyse Crystal structure of 4-stranded oxytricha telomeric DNA in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1D59
- Type
- DNA
- Length
- 48 nucleotides
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)- 3')
- Pockets
- 1 · best druggability 0.34
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | DNA (5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)- 3') | dna | 12 | — | — |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 104 | 0.34 | 0.74 | 12 | empty |
Interfaces
4 interfaces between chains.
- A–B · 593 Ų buried · 47 hydrogen bonds · nucleic-nucleic
- C–D · 576 Ų buried · 33 hydrogen bonds · nucleic-nucleic
- A–C · 76 Ų buried · 1 hydrogen bond · nucleic-nucleic
- B–D · 28 Ų buried · 0 hydrogen bonds · nucleic-nucleic
Compared structures
- 1D59 · Crystal structure of 4-stranded oxytricha telomeric DNA · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1D59 · PDBe 1D59
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