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Crystal structure of dsbg K113E mutant
Analyse Crystal structure of dsbg K113E mutant in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2H0H
- Type
- protein
- Length
- 459 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- THIOL:DISULFIDE interchange protein dsbg
- UniProt
- P77202
- Ligands
- SO4
- Pockets
- 6 · best druggability 0.83
Structure
x-ray diffraction · 2 distinct chains · 37% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | THIOL:DISULFIDE interchange protein dsbg | protein | 229 | 37% helix, 23% strand | P77202 |
| B | THIOL:DISULFIDE interchange protein dsbg | protein | 230 | 38% helix, 23% strand | P77202 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 5 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 245 | 0.83 | 0.95 | 33 | empty |
| 2 | 160 | 0.48 | 0.77 | 29 | empty |
| 3 | 134 | 0.47 | 0.78 | 25 | empty |
| 4 | 137 | 0.45 | 0.77 | 22 | empty |
| 5 | 89 | 0.40 | 0.77 | 23 | empty |
Interfaces
1 interface between chains.
- A–B · 1732 Ų buried · 27 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P77202
- Elsewhere: RCSB PDB 2H0H · PDBe 2H0H · UniProt P77202
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