Research workbench
NMR structure of UPF0301 protein SO3346 from shewanella oneidensis: northeast structural genomics consortium target SOR39
Analyse NMR structure of UPF0301 protein SO3346 from shewanella oneidensis: northeast… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2GZO
- Type
- protein
- Length
- 187 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- UPF0301 protein SO3346
- UniProt
- Q8EBZ9
- Pockets
- 3 · best druggability 0.60
Structure
solution nmr · 1 distinct chain · 20% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | UPF0301 protein SO3346 | protein | 187 | 20% helix, 20% strand | Q8EBZ9 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 273 | 0.60 | 0.79 | 41 | empty |
| 2 | 237 | 0.58 | 0.79 | 34 | empty |
| 3 | 103 | 0.49 | 0.81 | 17 | empty |
Compared structures
- 2GZO · NMR structure of UPF0301 PROTEIN SO3346 from Shewanella oneidensis: Northeast Structural… · the same entry in another collection · chain A against A, TM-score 1.00
- Q8EBZ9 · AlphaFold monomer V2.0 prediction for UPF0301 protein SO_3346 (Q8EBZ9) · a predicted model of the same protein · chain A against A, TM-score 0.64
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8EBZ9
- Elsewhere: RCSB PDB 2GZO · PDBe 2GZO · UniProt Q8EBZ9
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