Research workbench
1.5 a crystal structure of a protein of unknown function ATU1052 from agrobacterium tumefaciens
Analyse 1.5 a crystal structure of a protein of unknown function ATU1052 from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2GZ4
- Type
- protein
- Length
- 791 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein ATU1052
- UniProt
- Q8UGI5
- Pockets
- 7 · best druggability 0.75
Structure
x-ray diffraction · 4 distinct chains · 58% helix, 4% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical protein ATU1052 | protein | 200 | 59% helix, 4% strand | Q8UGI5 |
| B | Hypothetical protein ATU1052 | protein | 198 | 59% helix, 4% strand | Q8UGI5 |
| C | Hypothetical protein ATU1052 | protein | 196 | 57% helix, 4% strand | Q8UGI5 |
| D | Hypothetical protein ATU1052 | protein | 197 | 58% helix, 4% strand | Q8UGI5 |
Pockets
7 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 950 | 0.75 | 0.78 | 98 | empty |
| 2 | 334 | 0.67 | 0.81 | 39 | empty |
| 3 | 305 | 0.63 | 0.80 | 35 | empty |
| 4 | 329 | 0.63 | 0.79 | 29 | empty |
| 5 | 184 | 0.51 | 0.78 | 20 | empty |
Interfaces
5 interfaces between chains.
- A–C · 2207 Ų buried · 26 hydrogen bonds · protein-protein
- B–D · 2158 Ų buried · 27 hydrogen bonds · protein-protein
- A–D · 217 Ų buried · 0 hydrogen bonds · protein-protein
- A–B · 136 Ų buried · 2 hydrogen bonds · protein-protein
- C–D · 66 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 2GZ4 · 1.5 A Crystal Structure of a Protein of Unknown Function ATU1052 from Agrobacterium… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8UGI5
- Elsewhere: RCSB PDB 2GZ4 · PDBe 2GZ4 · UniProt Q8UGI5
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