Research workbench
Molecular recognition of fatty acids by peroxisome proliferator-activated receptors
Analyse Molecular recognition of fatty acids by peroxisome proliferator-activated… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2GWX
- Type
- protein
- Length
- 532 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein (ppar-delta)
- UniProt
- Q03181
- Pockets
- 8 · best druggability 0.83
Structure
x-ray diffraction · 2 distinct chains · 62% helix, 5% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein (ppar-delta) | protein | 265 | 64% helix, 5% strand | Q03181 |
| B | Protein (ppar-delta) | protein | 267 | 60% helix, 4% strand | Q03181 |
Pockets
8 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 560 | 0.83 | 0.88 | 56 | empty |
| 2 | 511 | 0.83 | 0.88 | 54 | empty |
| 3 | 67 | 0.56 | 0.88 | 15 | empty |
| 4 | 86 | 0.43 | 0.79 | 12 | empty |
| 5 | 85 | 0.41 | 0.78 | 16 | empty |
Compared structures
- 2GWX · Molecular recognition of fatty acids by peroxisome proliferator-activated receptors · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q03181
- Elsewhere: RCSB PDB 2GWX · PDBe 2GWX · UniProt Q03181
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